Quantitative shotgun proteome analysis by direct infusion | Nature Methods
Frontiers | Recent Developments in Data Independent Acquisition (DIA) Mass Spectrometry: Application of Quantitative Analysis of the Brain Proteome
Strategies to enable large-scale proteomics for reproducible research | Nature Communications
Chromatogram libraries improve peptide detection and quantification by data independent acquisition mass spectrometry | Nature Communications
MaxDIA enables library-based and library-free data-independent acquisition proteomics | Nature Biotechnology
Rapid, deep and precise profiling of the plasma proteome with multi-nanoparticle protein corona | Nature Communications
Group-DIA: analyzing multiple data-independent acquisition mass spectrometry data files | Nature Methods
Data-independent acquisition mass spectrometry (DIA-MS) for proteomic applications in oncology - Molecular Omics (RSC Publishing) DOI:10.1039/D0MO00072H
Deep representation features from DreamDIAXMBD improve the analysis of data-independent acquisition proteomics | Communications Biology
DIAMetAlyzer allows automated false-discovery rate-controlled analysis for data-independent acquisition in metabolomics | Nature Communications
Hybrid-DIA: intelligent data acquisition integrates targeted and discovery proteomics to analyze phospho-signaling in single spheroids | Nature Communications
Prioritized mass spectrometry increases the depth, sensitivity and data completeness of single-cell proteomics | Nature Methods
Use of Hybrid Data-Dependent and -Independent Acquisition Spectral Libraries Empowers Dual-Proteome Profiling | Journal of Proteome Research
Implementing the reuse of public DIA proteomics datasets: from the PRIDE database to Expression Atlas | Scientific Data
Prosit: proteome-wide prediction of peptide tandem mass spectra by deep learning | Nature Methods
DIA mass spectrometry | Nature Methods
A comprehensive spectral assay library to quantify the Escherichia coli proteome by DIA/SWATH-MS | Scientific Data
Increasing the throughput of sensitive proteomics by plexDIA | Nature Biotechnology
Deep learning boosts sensitivity of mass spectrometry-based immunopeptidomics | Nature Communications
DIALib-QC an assessment tool for spectral libraries in data-independent acquisition proteomics | Nature Communications
A streamlined platform for analyzing tera-scale DDA and DIA mass spectrometry data enables highly sensitive immunopeptidomics | Nature Communications
Quantifying Plant Dynamic Proteomes by SWATH-based Mass Spectrometry: Trends in Plant Science
A comprehensive LFQ benchmark dataset on modern day acquisition strategies in proteomics | Scientific Data
